Whole Exome sequencing - SRA

SRX194987: Whole Exome sequencing
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.1M spots, 629.5M bases, 294.7Mb downloads

UUID: 06fee100-e786-408b-9b44-394b811927eb

Design: Whole Exome sequencing via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (CHS) Southern Han Chinese population HapMap population

Sample: Coriell HG00623

Library:

Name: Catch-169992

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward77 reverse

lsid: broadinstitute.org:bsp.prod.sample:3DAU1

project: C459

sample_barcode: 219632.0

target_set: whole_exome_agilent_1.1_refseq_plus_3_boosters

work_request: 31672

Name	Step	Program	Version	Notes
base caller	2012-08-24 23:57:07.0	GAPipeline	RTA1.13.48	Sequencer Application 1.5.15.1

Runs: 2 runs, 4.1M spots, 629.5M bases, 294.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR590845	2,090,026	317.7M	149.1Mb	2012-10-14
SRR590951	2,051,742	311.9M	145.6Mb	2012-10-14

Supplemental Content

Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 1, mRNA
Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 1, mRNA
gi|1519473487|ref|NM_015416.5|

Nucleotide
LOC123000053 [Thunnus albacares]
LOC123000053 [Thunnus albacares]
Gene ID:123000053

Gene
cdkl1 cyclin dependent kinase like 1 (CDC2 related kinase) [Danio rerio]
cdkl1 cyclin dependent kinase like 1 (CDC2 related kinase) [Danio rerio]
Gene ID:445316

Gene
dmac2l distal membrane arm assembly component 2 like [Danio rerio]
dmac2l distal membrane arm assembly component 2 like [Danio rerio]
Gene ID:393187

Gene

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SRA